Ok there are 3 types of losses you have to worry about.
-losses due to the fittings
-flow losses (due to a combination of velocity, surface roughness of inside of pipe, viscosity of fluid and length of pipe)
-vertical rise
Assuming the vertical rise will be the same between the two setups you only need to look at the first two. I will go find the equations tomorrow but I need you to find the typical "surface roughness" for the two materials you will be using. This will be in the range of thousandths to millionths of an inch. Google it, or goto a manufacturers website.
What are your flow rates? This will only really matter if your on the edge of not enough or you have some serious flow. Also, the quick and easy way will be to increase the diameter of your pipes. This will slow down the water's speed (mph) yielding less loss, but will not effect the flow rate (gph/gpm).